rs264012322 SNP Detail

Summary

• ID
  rs264012322
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89304976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCTTGGAGC TTTGATGGGA ATCAGCTTCT GCTTAGGAGG
  GATGCCTCTG CCTCCTGGGC CACTAAACTC TCTCTCTCTC CCTTCCCTCC TTTCTTCCTT
  Y
  CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT
  CTTTCTTTCT TTTTCTGTTT GTCAAGACAG GGTTTCCCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320836927	CHEV_3_89201591	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264012322					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89304976 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13430	CpG island 13430	1079 bp distal
Gm15417	predicted gene 15417	within coordinates
Rr381	regulatory region 381	1152 bp distal
Rr580075	regulatory region 580075	1948 bp distal
Rr580076	regulatory region 580076	439 bp distal
Rr580077	regulatory region 580077	1699 bp distal
Rr580078	regulatory region 580078	1081 bp distal
Tssr30102	transcription start site region 30102	1947 bp downstream