rs264039794 SNP Detail

Summary

• ID
  rs264039794
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43086337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTATGGGAC TGGTGTTTTG
  ACCCCACTGC CCCTTTACTG TTGGAAACTC TAATGCTAGA GTCTCAGAGT GTAAAAACCA
  CAGGAAAGTG TGACACAACT GTTTCCTCAG CCACATCTCC CCTTTCAGTT AATTCACACC
  CTAGTATGAT TAGCCCACCT CCCACCTCTG GGCACCCCCT CAAGTCCCAC CCCACCCCCA
  M
  GGTCTTCCAG GAAACCAGTT GTCTCCAACT GTGGAGAACC TGTGCAGAAC CTGTGACAAC
  AGTCTAAACC ACTACCTAGA ACACGAGGGT AGATACCCCC AGAGCTGCAA GCAAGTAAAG
  GCTTCTGCAG GGCCCACCCC TACCACATAG GAGGAGAGGA GCCAATCGAA GAGGGGAGGC
  CAAACCACTC AGGAAGGGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371131742	MGP_WTSI_7_50692283	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264039794					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371131742	MGP_WTSI_7_50692283	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43086337 () rs orientation: forward

Symbol	Name	Function Class
Gm52993	predicted gene, 52993	922 bp downstream
Lim2	lens intrinsic membrane protein 2	917 bp downstream
Nkg7	natural killer cell group 7 sequence	225 bp upstream
Rr645958	regulatory region 645958	488 bp distal
Rr645959	regulatory region 645959	441 bp distal
Rr645960	regulatory region 645960	within coordinates
Tssr2210	transcription start site region 2210	95 bp upstream
Tssr65999	transcription start site region 65999	53 bp upstream
Tssr66000	transcription start site region 66000	219 bp upstream
Tssr66001	transcription start site region 66001	673 bp upstream
Tssr66002	transcription start site region 66002	687 bp upstream