rs264042797 SNP Detail

Summary

• ID
  rs264042797
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:86414318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACCACTC CAGCCAGACC
  CCGCAGTCCC TTGGAGTCTG GGGCAGATGT AAACTTTCCT TTCGGTACTG CAGCATCATA
  CAGCCTGGCG GGGGCGGCGC ACAGAGTGGC GCTGGACCTC AGAGTTGGTC AGGGAAAACC
  ATTTCTTCTT AGGCAGGATC TCTGGGTGGT CCAGAGGAGC ATATAGTTAA AAAGTGGACA
  Y
  GTGCAGAAAA TGCTGGTGCC CAGAGAGGAC GCAGGTGGAA GGAGGGAGGC AGCAGGGTTG
  ATCTTTGCTG GGAAAGAAGA ACTAATCCTC CTTTGTGGGG TTAGGGGAGT TCAAGGGCCC
  ACCTTTCATC CCCCAGGTAA GCTAATGTAT ACCTGAACCC AGGCGCTTCA GGAGGCATGC
  AGCCACTGCC CTCTAAAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401532371	MGP_WTSI_18_86565585	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264042797					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401532371	MGP_WTSI_18_86565585	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:86414318 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi10352	CpG island 10352			1828 bp distal
Cpgi10353	CpG island 10353			94 bp distal
Neto1	neuropilin (NRP) and tolloid (TLL)-like 1			Intron
				Noncoding-Transcript-Variant
Rr542240	regulatory region 542240			1915 bp distal
Rr542241	regulatory region 542241			1231 bp distal
Rr542242	regulatory region 542242			651 bp distal
Tg(Ddx4-cre)1Dcas	transgene insertion 1, Diego H Castrillon			within coordinates
Tssr152242	transcription start site region 152242			1411 bp downstream
Tssr152243	transcription start site region 152243			1390 bp downstream
Tssr152244	transcription start site region 152244			1330 bp downstream
Tssr152245	transcription start site region 152245			1264 bp downstream
Tssr152246	transcription start site region 152246			1225 bp downstream
Tssr152247	transcription start site region 152247			1180 bp downstream
Tssr152248	transcription start site region 152248			960 bp downstream
Tssr152249	transcription start site region 152249			908 bp downstream
Tssr152250	transcription start site region 152250			630 bp downstream