rs264060948 SNP Detail

Summary

• ID
  rs264060948
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94844874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTACAGGGA GCCCGTGGAA
  TTGTTCCCCC CTTCTTCCTG CCCCCTTCTT TCCTTTTCCT TTATCCCCAA AACTTTTTGC
  TTTTTCTTCT TCCTTTTCCC TCTCTCCCTC TGTCCATCTG AGAACCTGAG GCCCTAGAGG
  GATGGTAACT AATTGTCCCC CACATCTCAG AGAATGGGGA CGGTGACATA GTAGAAGGCC
  Y
  GAGAATCCAG CAGGCAGAAG TCTGGGGTGA ACCAGACAGT AGACATAAGG ACACAGATGA
  CCCCTTTCAC TCGGGGAGAC AGGTCTCAAA TTTGAAAGGA AGGAACAGGC CATTTGTAGC
  TTCCCTCTCT TGTGCTACCA GTCTACTGTG GCACCCATAG GACACGTTCA TATGGTCACG
  GAGTATCCAA GACTATTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384336303	MGP_WTSI_11_94815362	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264060948					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384336303	MGP_WTSI_11_94815362	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94844874 () rs orientation: forward

Symbol	Name	Function Class
Col1a1	collagen, type I, alpha 1	1006 bp downstream
D11Lis1	DNA segment, Chr 11, Lisse 1	579 bp distal
Gm74287	predicted gene, 74287	203 bp downstream
Gm74290	predicted gene, 74290	1363 bp upstream
Rr454892	regulatory region 454892	1482 bp distal
Rr454893	regulatory region 454893	1132 bp proximal
Tssr104297	transcription start site region 104297	1984 bp downstream
Tssr104298	transcription start site region 104298	1950 bp downstream
Tssr104299	transcription start site region 104299	1916 bp downstream
Tssr104300	transcription start site region 104300	1896 bp downstream
Tssr104301	transcription start site region 104301	1776 bp downstream
Tssr104302	transcription start site region 104302	1762 bp downstream
Tssr104303	transcription start site region 104303	1743 bp downstream
Tssr104304	transcription start site region 104304	1701 bp downstream
Tssr104305	transcription start site region 104305	1679 bp downstream
Tssr104306	transcription start site region 104306	1664 bp downstream
Tssr104307	transcription start site region 104307	1647 bp downstream
Tssr104308	transcription start site region 104308	1574 bp downstream
Tssr104309	transcription start site region 104309	1550 bp downstream
Tssr104310	transcription start site region 104310	1464 bp downstream
Tssr104311	transcription start site region 104311	1415 bp downstream
Tssr104312	transcription start site region 104312	1346 bp downstream
Tssr104313	transcription start site region 104313	1330 bp downstream
Tssr104314	transcription start site region 104314	925 bp downstream
Tssr104315	transcription start site region 104315	1361 bp upstream