rs264065809 SNP Detail

Summary

• ID
  rs264065809
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72810634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCGCACGCT CCCGGAGGCC GGGAGCcggc
  ggtggcggcc ccgggctggc tgtgggcggc agtggcagcg gcggaggcag cgAGGGTTGC
  TCTCTCTCGG CTTTACGTAC CGGTCATAGT GTGTTTAGGA CAGCTCAGGC GGGGCTCCCC
  S
  CCGCCTTACA CATGGTGAGA AGCGAAGGCG GCGGCGGCGG GAGAGGATGC GGGAAGCGGC
  GGCGGACACG GCCGGAGCGG TCCGGGGAAT TTTTTTTTTC CTATTTTGAT TGACTGTGCG
  GGAAACACAA AAGGTGGAGC CTCCAGCCCA                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320344167	CHEV_2_72818347	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264065809					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72810634 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11763	CpG island 11763	within coordinates
D130067C23Rik	RIKEN cDNA D130067C23 gene	within coordinates
Rr373352	regulatory region 373352	within coordinates
Rr559063	regulatory region 559063	864 bp distal
Rr559064	regulatory region 559064	126 bp proximal
Sp3	trans-acting transcription factor 3	mRNA-UTR
Sp3os	trans-acting transcription factor 3, opposite strand	within coordinates
Tssr18359	transcription start site region 18359	1156 bp downstream
Tssr18360	transcription start site region 18360	1133 bp downstream
Tssr18361	transcription start site region 18361	789 bp downstream
Tssr18362	transcription start site region 18362	770 bp downstream
Tssr18363	transcription start site region 18363	314 bp downstream
Tssr24523	transcription start site region 24523	1224 bp upstream
Tssr24524	transcription start site region 24524	948 bp upstream
Tssr24525	transcription start site region 24525	622 bp upstream
Tssr24526	transcription start site region 24526	112 bp downstream
Tssr24527	transcription start site region 24527	605 bp downstream
Tssr24528	transcription start site region 24528	631 bp downstream