rs264093953 SNP Detail

Summary

• ID
  rs264093953
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148990736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAATGCACA GCCACTGGGG TTTGATACTG
  GCTGTTCTCA GAAAATGTTT GGGGGGGGGC CCAGCTAGAA TTAGCAAGTT CTTTAAAGAC
  CTCATTGCCC CACCCCcata cacacacata cacacacaca cacacacaca cacacacaca
  S
  aGACGCTGTT TTCTGTGACT CGGTGTGGAT TACTGTTAGA ATCAAATGAA TCTTTGTGAT
  TGCTATCTTG CCTCCGATCA CACCACTTAG TGCATACATG TACCTGCTCT AGGGTTACCA
  GACATTTAGG GCTACTGTTA CCTGAGGGAT                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321720088	CHEV_5_149865502	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264093953					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148990736 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17090	CpG island 17090	267 bp distal
D5Mit287	DNA segment, Chr 5, Massachusetts Institute of Technology 287	within coordinates
Hmgb1	high mobility group box 1	869 bp upstream
Rr124812	regulatory region 124812	within coordinates
Rr378801	regulatory region 378801	1910 bp downstream
Rr399531	regulatory region 399531	615 bp downstream
Tssr1757	transcription start site region 1757	696 bp downstream
Tssr49872	transcription start site region 49872	717 bp downstream
Tssr54619	transcription start site region 54619	1947 bp upstream
Tssr54620	transcription start site region 54620	873 bp upstream
Tssr54621	transcription start site region 54621	855 bp upstream