rs264103157 SNP Detail

Summary

• ID
  rs264103157
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19308068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCACCCCT CCCCGTCTCC
  GCCTCTAGGT ACCAGGAAAG GGGCTTACGG AATGCTGCCG CTGGGATGTA CCCAGCCCAC
  TTTGCAACCT TTGTTTAAAA ATGGAAAAAC TAAGCCGGGC GTGGTGGCGC ACGCCTTTAA
  TCCCAGCACT CGGGAGGCAG AGGCAGGCGG ATTTCTGAGT TCGAGGCCAG CCTAATCTAC
  C
  AAGTGAGTTC CAGGGCAGCC AGGGCTACGC AGAGAAACCC TGTCTCGAAC ACCCCCCACC
  AAAAAAAAAA AAAAAAAAAA AGGGAAAAAC TGAGGCCCTG CATAGGGGCA TGTGATCTCA
  GCCCGGGTAC AAAAAATGGA TTGCATTCCC ACAGAGTTCA CTTAGGCAGA AAGAAGAATG
  CAGCTTCCCC TTACTGCCTG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370752275	MGP_WTSI_7_20159492	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264103157					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370752275	MGP_WTSI_7_20159492	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19308068 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18500	CpG island 18500	477 bp distal
Gemin7	gem nuclear organelle associated protein 7	800 bp upstream
Rr380485	regulatory region 380485	within coordinates
Rr643193	regulatory region 643193	1186 bp distal
Rr643194	regulatory region 643194	within coordinates
Rr643195	regulatory region 643195	485 bp distal
Tssr70933	transcription start site region 70933	780 bp upstream
Tssr70934	transcription start site region 70934	766 bp upstream
Tssr70935	transcription start site region 70935	740 bp upstream
Tssr70936	transcription start site region 70936	298 bp upstream