rs264110709 SNP Detail

Summary

• ID
  rs264110709
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116025398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCCGAAG GTCCTGAGTT
  CAAATTCCGG CAACCACATG GTGGCTCACA ACCATCCATA ATGAGATCTG ACTCCCTCTT
  CTAGAGTGTC AGAAGACAGC TACAGTGTAC TTACATATAA TAAATAATAA ATAAATCTTA
  AAAAAAAAAA GGGCTGGTGA GATGGCTCAG TGGGTAAGAG CACCCGACTG CTCTTCCGAA
  R
  GTCCAGAGTT CAAATCCCAG CAACCACATG GTGGCTCACA ACCATCCGTA ACAAGATCTG
  ACTCCCTCTT CTGGTGTGTC TGAAGACAGC TACAGTGTAC TTACATATAA TAATAAATAA
  ATCTTTAAAA AAAAAAACTC AGTCACGTAT ATAACATAGA GTGATACTCT TTTTTTTTTT
  CCTTTTTTCT TTTGGTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362944911	MGP_WTSI_4_115840806	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G	G	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264110709					SNP	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G	G	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362944911	MGP_WTSI_4_115840806	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116025398 () rs orientation: forward

Symbol	Name	Function Class
Rr84349	regulatory region 84349	198 bp distal
Rr84350	regulatory region 84350	3 bp proximal
Rr84351	regulatory region 84351	603 bp proximal
Rr95993	regulatory region 95993	1983 bp proximal
Rr101863	regulatory region 101863	198 bp distal
Rr101864	regulatory region 101864	301 bp proximal
Tspan1	tetraspanin 1	600 bp upstream
Tssr42870	transcription start site region 42870	622 bp upstream
Tssr42871	transcription start site region 42871	594 bp upstream