rs264111092 SNP Detail

Summary

• ID
  rs264111092
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135764018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCTGCTT TATCGGGATT
  CTCAAGAGGG ACAGCTGGTT TATGTTACAA GCCTGTTCCC TGCATATCTG CTCTGGTTTT
  AAATAGCTTT ATCTGAGCAG CTGGAGGACC ACATGAGCTT ATATGGCGTG GGGTACTTGT
  TCTTTTAGCC CTGTGCCGGG CACCTGCCAA AATAGCAGCC AACACCCCCC ATTGTGTTGT
  T
  CCCCCCCCCC CCCATCTCCT GCTGCACATT CCTCCCTCCG CGGGGCTTGG CTCACAAGGC
  CCCAGCCCAC ATGCCTGCTT AAAGCTCTCC CCATGCCCTG CCCTCAGCCA GTCCCTGCTG
  AGGCTGAACA GATACCTCAA GACCTGTGTG CAGTCCCTGT TCAGAGGTAA GACAAGGGGG
  AGCTCTAGGA AGGGACAGAG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss351551690	MGP_WTSI_1_137732857	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs264111092					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351551690	MGP_WTSI_1_137732857	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135764018 () rs orientation: forward

Symbol	Name	Function Class
Rr419292	regulatory region 419292	1417 bp distal
Rr419293	regulatory region 419293	1853 bp distal
Rr419294	regulatory region 419294	within coordinates
Rr419295	regulatory region 419295	144 bp proximal
Rr419296	regulatory region 419296	612 bp proximal
Rr419297	regulatory region 419297	1469 bp proximal
Tnnt2	troponin T2, cardiac	74 bp upstream
Tssr9005	transcription start site region 9005	100 bp upstream