rs264130968 SNP Detail

Summary

• ID
  rs264130968
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133393975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTCTTCT TTTTAATGTG
  CTCTTACCTA AAAACTTCAA ACTCAAGTTG AATATTGGCC CAATGAGGGA ACTCAGAGGC
  CAGTGGACTC TGGATTTGCC CTAGTCTCCC GCAGCTGTGG GCGCGGATCC AGGTCCCGGG
  GGTCGGCTTC ACACTCATCC GGGACGCGAC CCCTTAGCGG CCGCGCGCTC GCCCCGCCCC
  R
  CTCCACCGCG GCCGCCCCGT AGGGCGCGCC GTCCACACCC CTGCGCGCCG CTCCCGCCCG
  CCCGGGGATC CCCGGCGCGC TGCGCCTCCG AGGGGGAGGT GTTCGGCCAC GGCCGGGAGG
  GAGCCGGCAG GCGGCGTCTC CTTTAAAAGC CGCGAGCGCC GCGCCACGGC GCCTCCGTCG
  TCGCCGCCGG AGTCCTCGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss355733541	MGP_WTSI_2_133377791	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs264130968					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355733541	MGP_WTSI_2_133377791	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133393975 () rs orientation: forward

Symbol	Name	Function Class
Bmp2	bone morphogenetic protein 2	104 bp upstream
Cpgi12316	CpG island 12316	within coordinates
Rr366783	regulatory region 366783	within coordinates
Rr565619	regulatory region 565619	1256 bp distal
Rr565620	regulatory region 565620	1735 bp distal
Rr565621	regulatory region 565621	within coordinates
Rr565622	regulatory region 565622	115 bp proximal
Rr565623	regulatory region 565623	120 bp proximal
Rr565624	regulatory region 565624	1252 bp proximal
Tssr20347	transcription start site region 20347	163 bp upstream
Tssr20348	transcription start site region 20348	220 bp upstream
Tssr20349	transcription start site region 20349	949 bp upstream