rs264140788 SNP Detail

Summary

• ID
  rs264140788
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151922308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGGAATA ATAATAATAA
  TAATAATAAT AATAATAATA ATAATAATAA ATGTCCCAAG GGACAGGAAA GGATGCAATG
  TAGCCAGAAA AATAAGCAGA GACTCCCAGA TTGTACAGAA TCTTGGCAAG ACCAGATACC
  CAACTGTTAC TGGGAGATTT CTTAGCCACA CTTCCAGGAC TATCAGAGCC CTTGACTTCA
  Y
  CGTGCCAGAG GACACTTAAA GGTTTGAAAA CTGCTGCTGA CTCTCTGTGT GACTAGATCT
  TCCACTCCCA ATTGACACTG GAGGACCCAG TCCCCAAGGA CATCCCCACT CCATCAGCTT
  TACATCCATA ATAGATGATA TGGTCCAGGA AGAGCCCTGC ATCCCCAGAG TCCAATACTG
  GTACTCCGGC ACACTGACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356144194	MGP_WTSI_2_151906124	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264140788					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356144194	MGP_WTSI_2_151906124	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151922308 () rs orientation: forward

Symbol	Name	Function Class
AA387200	expressed sequence AA387200	within coordinates
Cpgi12434	CpG island 12434	434 bp proximal
Cpgi12435	CpG island 12435	1117 bp proximal
Gm75114	predicted gene, 75114	within coordinates
Rr567274	regulatory region 567274	24 bp distal
Rr567275	regulatory region 567275	within coordinates
Rr567276	regulatory region 567276	1060 bp proximal
Rr567277	regulatory region 567277	1152 bp proximal
Scrt2	scratch family zinc finger 2	1429 bp upstream
Tssr20749	transcription start site region 20749	431 bp upstream
Tssr20750	transcription start site region 20750	475 bp upstream
Tssr20751	transcription start site region 20751	510 bp upstream
Tssr20752	transcription start site region 20752	526 bp upstream
Tssr20753	transcription start site region 20753	555 bp upstream
Tssr20754	transcription start site region 20754	577 bp upstream
Tssr20755	transcription start site region 20755	720 bp upstream
Tssr20756	transcription start site region 20756	844 bp upstream
Tssr20757	transcription start site region 20757	986 bp upstream
Tssr20758	transcription start site region 20758	1214 bp upstream
Tssr20759	transcription start site region 20759	1244 bp upstream
Tssr20760	transcription start site region 20760	1422 bp upstream
Tssr20761	transcription start site region 20761	1480 bp upstream