rs264144066 SNP Detail

Summary

• ID
  rs264144066
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132797545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCAGGGGC GCGGCCAGGC
  AGGGAGGGCG CGGGAGCATG CGGGCGACGA CGCGGGCCAC CGCGCCTTCC CGCCCAGCTC
  GAGCCGGGAC TCCGAGGCTA CTTCTGGAAG CCGCGGCCTG AGGAGGAGCA CTCGCCTCCC
  AGCGAGGCCC TGAGCAGGGG AAAGGGGGCA AAAAGAAGGA AGAGACAACG TGTCTGCGCG
  Y
  CCCCCGCCCA ACGCCATTCA TAATCCGGCG GACCGGAAGG AGTGCCCTAC GTCACTTCCT
  GCTGTCTCAC TCGGAAACGT TCCCCTTCCG ACCTGTTGCG GGAACCTTTG TTTCTCTCTT
  CTTAAAGCTG GTGAGGGCGG GGACGGATTC GAAGAGAGCT ACCGGGAACC GACCGAGTGG
  CGGGGCGGAG CGGTGAGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359780802	MGP_WTSI_3_132754748	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264144066					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359780802	MGP_WTSI_3_132754748	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132797545 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13847	CpG island 13847			within coordinates
Gstcd	glutathione S-transferase, C-terminal domain containing			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Ints12	integrator complex subunit 12			71 bp upstream
Rr398028	regulatory region 398028			589 bp downstream
Rr398029	regulatory region 398029			within coordinates
Rr398030	regulatory region 398030			1242 bp upstream
Rr585500	regulatory region 585500			within coordinates
Rr585501	regulatory region 585501			31 bp proximal
Rr585502	regulatory region 585502			67 bp proximal
Rr585503	regulatory region 585503			239 bp proximal
Rr585504	regulatory region 585504			1109 bp proximal
Tssr31768	transcription start site region 31768			43 bp upstream
Tssr31769	transcription start site region 31769			60 bp upstream
Tssr31770	transcription start site region 31770			102 bp upstream
Tssr31771	transcription start site region 31771			139 bp upstream
Tssr31772	transcription start site region 31772			786 bp upstream
Tssr35744	transcription start site region 35744			22 bp upstream
Tssr35745	transcription start site region 35745			1 bp upstream
Tssr35746	transcription start site region 35746			14 bp downstream
Tssr35747	transcription start site region 35747			245 bp downstream
Tssr35748	transcription start site region 35748			261 bp downstream
Tssr35749	transcription start site region 35749			594 bp downstream