rs264150609 SNP Detail

Summary

• ID
  rs264150609
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156020338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAACACAT CACCAATAGT
  AGGATCTCTA AGTTACCAGG CTTAAGGTCT GAGACACCAG TGACAATGCA TGCATGCACA
  CTGCTATTTT CACCACCAAC TGGTCAAAGA ATGAAGAGTG CTGACTTTTA CTGTGATACC
  GAAATGGGTC ATATTGTATT ACTGGCCAAA ATACTTCCTT TCTAGTTTTG AGTGTGAAAA
  R
  CTATGGCAGG GCCTAATTAA AAATAAACAC TATGGAGAGC AGTAAAACAG TCATCAAGTG
  ACTCTAAGCT GTGATACTGT CTCTTGCTTT TTTTCTTTTC TCTCTTCTGT TCTTTTTCTT
  GGTTTTTTTT CCTCTTTTTT GCCAATTTCT ATTCAGGGAT CCAAGAATCT TAATAATTAT
  TAACTGAAAA GCAGATCAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356230723	MGP_WTSI_2_156004154	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264150609					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356230723	MGP_WTSI_2_156004154	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156020338 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12544	CpG island 12544	902 bp proximal
Gm75045	predicted gene, 75045	1180 bp upstream
Rbm39	RNA binding motif protein 39	within coordinates
Rr367341	regulatory region 367341	963 bp upstream
Rr367342	regulatory region 367342	1720 bp upstream
Rr568193	regulatory region 568193	461 bp distal
Rr568194	regulatory region 568194	612 bp proximal
Rr568195	regulatory region 568195	1152 bp proximal
Rr568196	regulatory region 568196	1191 bp proximal
Rr568197	regulatory region 568197	1739 bp proximal
Tssr21144	transcription start site region 21144	1167 bp upstream
Tssr27040	transcription start site region 27040	1832 bp upstream
Tssr27041	transcription start site region 27041	1600 bp upstream
Tssr27042	transcription start site region 27042	638 bp upstream
Tssr27043	transcription start site region 27043	1554 bp downstream
Tssr27044	transcription start site region 27044	1717 bp downstream