rs264159148 SNP Detail

Summary

• ID
  rs264159148
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:35018875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGCATGG ATAGAGAGCT
  GGACATCAGC CTAAACTACA CAATGAGACA CTATAATAAA TAATCAAATA ATTAGAAAAG
  AGAGAGAGAA GCAGACCAAG TGGGCTAAGA ATGAGAGGTC CTTCAGAAAA TCTAAGGTAC
  AGACATCTGC CAATGGGCGC TGTTATCTCA CTTCACAAGC TTGGCCAAGA CGTGGGGGGG
  S
  GGGGGGGGGT GTGATTCAGC CTGGCTTGGT GACTCACACT TTTAATCTCA GCACTCAAGA
  GGCAGAGGCA GAGGCAGAGG CAGAGGCAGA GGCAGAGGCA GAGGCAGAGG CAGAGGCAGA
  GGCAGAGGCA GAGGCAGAGG CAGAGGCAGA GGCAGAGGAG GCAGAGGAGG CAGAGGCAGA
  GACAGAGGAG GCAGAGGAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	CE/J	CZECHII/EiJ	FVB/NJ	MOLF/EiJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J
ss370973308	MGP_WTSI_7_36104469	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	CE/J	CZECHII/EiJ	FVB/NJ	MOLF/EiJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J
rs264159148					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370973308	MGP_WTSI_7_36104469	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:35018875 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18869	CpG island 18869	846 bp distal
Gpatch1	G patch domain containing 1	1010 bp upstream
Tssr72030	transcription start site region 72030	1013 bp upstream