rs264169734 SNP Detail

Summary

• ID
  rs264169734
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59091392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGCAACCC TCATTATAAC
  ACCGCTGACT TAAAGACATC AAAGAAGCCA CACTGTCCTT ATGAAGAAGT TCTTCCTCCT
  CCGCCTTTTC TGGCTGAAAG CTGTCAGTTA AAAAATGGCC TTTTGGGCTG GAGAGATGGC
  TCAGCAGTTA AGAGCACTGA CTGTTCTTGC AAAGGTCCTG AGTTCAAATC CCAGCAACCA
  Y
  ATGGTGGCTC ACAACCATCC GCTAACGAGA TCTGACATCC TCTTTTGGTG TGTCTGAAGA
  CAGCTCCTGT GTACCTACAT ATAATAATAA ATAAATCCTT GGGCCAGAGC AAGCTGGGTT
  GGAGCGAACA GAGGTCCTAG TTCAAGTTCC AGCAAGGACA TGATGGCTCA CAACCATCTA
  TACAGCTATA GTGTACTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383539628	MGP_WTSI_11_59014068	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264169734					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383539628	MGP_WTSI_11_59014068	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59091392 () rs orientation: forward

Symbol	Name	Function Class
2610507I01Rik	RIKEN cDNA 2610507I01 gene	within coordinates
Cpgi2954	CpG island 2954	1460 bp proximal
Mrpl55	mitochondrial ribosomal protein L55	1920 bp upstream
Rr402602	regulatory region 402602	1803 bp upstream
Rr448112	regulatory region 448112	1020 bp proximal
Rr448113	regulatory region 448113	1871 bp proximal
Rr448114	regulatory region 448114	1983 bp proximal
Tssr101787	transcription start site region 101787	1914 bp upstream
Tssr108206	transcription start site region 108206	1116 bp downstream
Tssr108207	transcription start site region 108207	1146 bp downstream
Tssr108208	transcription start site region 108208	1575 bp downstream
Tssr108209	transcription start site region 108209	1603 bp downstream
Tssr108210	transcription start site region 108210	1810 bp downstream