rs264170050 SNP Detail

Summary

• ID
  rs264170050
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151964239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGACAAAA ACAGATGATG GAGTCCAGAT
  GAATTTCCAA ATCCCATCAA TTGGATTGCT AAAAACACTG CACATACTCA GTTAACCATA
  TAACTCTGCT CCATAAGTAC AAAGGTGGGG GTGGGGGTGT AGAAACCCCC AAACTCTGCA
  Y
  CTTGGACTTA ACAGACCCTT CTTAAATATC ACCTAATCTT CCTTCCCCCC CCCCCATCGG
  AACTGAAGTA GTCCAGGCCC ACCCATGTTT GCTTCCTCCT GGTACATCCC AGTTCCACCA
  AACTCAAAGG TTATTCTCAT TAGGTAGAAT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320062293	CHEV_1_153935618	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264170050					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151964239 () rs orientation: forward

Symbol	Name	Function Class
1700025G04Rik	RIKEN cDNA 1700025G04 gene	Intron
Cpgi853	CpG island 853	1120 bp proximal
Rr420417	regulatory region 420417	44 bp proximal
Rr420418	regulatory region 420418	1627 bp proximal
Tssr14207	transcription start site region 14207	1657 bp downstream
Tssr14208	transcription start site region 14208	1693 bp downstream
Tssr14209	transcription start site region 14209	1753 bp downstream
Tssr14210	transcription start site region 14210	1771 bp downstream
Tssr14211	transcription start site region 14211	1820 bp downstream