rs264191297 SNP Detail

Summary

• ID
  rs264191297
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70990096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAAGGGAC AGCAGGGAGG
  AGGGTAGAGA AGGAGAGGGC AGGACTAGGG AGGGCAAAGG AGAGGAGAGG GGAGGGGATA
  GAGGAGGGAG TAAAGCAGGG AGGAGGGGTA CCAGGAGGAG GAGGAGGATA AGGGAGGAGT
  GGCAGGGAGA GGAGATGAAG CAGACTCATG GTAAGTACTG GGCATCCTTC ACGCCTATGA
  Y
  CCAGCAGGAA GGTGTTTTGT CCACCTACAT GAGAACTTGG GGTAGAGACA AGGCCAGGAC
  ACAGTCATAT CTAGCTGTTC ACCCCTGTGC TTTTGTGGAA AACTGTCTTG GTGTGTTACT
  CCAAAGTCCT CTGCCACCTG CCACCGCTGC AGCTCTGTGG GACTTCTCAC TTAAGGGCAA
  GATTGAGCTG CATAGAGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324417480	CHEV_13_70980855	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264191297					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70990096 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	166 bp upstream
Cpgi5821	CpG island 5821	137 bp distal
Gm36529	predicted gene, 36529	within coordinates
Rr482298	regulatory region 482298	1822 bp distal
Rr482299	regulatory region 482299	1517 bp distal
Rr482300	regulatory region 482300	1590 bp distal
Rr482301	regulatory region 482301	1317 bp distal
Rr482302	regulatory region 482302	1267 bp distal
Rr482303	regulatory region 482303	234 bp distal
Rr482304	regulatory region 482304	within coordinates
Tssr123158	transcription start site region 123158	261 bp upstream
Tssr123159	transcription start site region 123159	223 bp upstream
Tssr123160	transcription start site region 123160	194 bp upstream
Tssr123161	transcription start site region 123161	167 bp upstream