rs264195750 SNP Detail

Summary

• ID
  rs264195750
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75368391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCTTCAA GCACACAGAC
  CAGATTTCCC ACGTCCATCT CCTTTATCCC TGAGTCCTGG CTGCCAGTGA CTGTCTAGCG
  AGGTCTCCAG TTAGGTCTAA TTCCATGTTT GTGCTGGACG CAGCTCCTTT AGCAGCATCC
  CCAAGCCCTG CTACAGCCGA ATTACGCTCA TAGTAAGGAC CACCAACTAG TCCCCGCCCC
  M
  CAACACTTCC CCACCCCCCC GCACCCGCAC ACCCCCCCCC CCCAGCTAGC CCGGTAAGAA
  GCGCAGGCGC ACGAGGGTTG GGCACGTCGG GAACTAGGGG CGGGGCATTG AGCCCCGCCC
  ATCTGCCCCG CCCACTCGAT CCACCCACTG ATTTCGCCAC CTTAGGCCAG TGGCCCCTAA
  TTCTGCTGCG GGCAGCGCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss391575943	MGP_WTSI_14_75530758	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs264195750					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391575943	MGP_WTSI_14_75530758	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75368391 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6736	CpG island 6736	159 bp distal
Cpgi6737	CpG island 6737	143 bp proximal
Gm62951	predicted gene, 62951	330 bp upstream
Lcp1	lymphocyte cytosolic protein 1	179 bp upstream
Lrrc63	leucine rich repeat containing 63	70 bp upstream
Rr297500	regulatory region 297500	within coordinates
Tssr4477	transcription start site region 4477	317 bp upstream
Tssr126606	transcription start site region 126606	156 bp upstream
Tssr126607	transcription start site region 126607	275 bp upstream
Tssr126608	transcription start site region 126608	322 bp upstream
Tssr126609	transcription start site region 126609	581 bp upstream
Tssr126610	transcription start site region 126610	633 bp upstream
Tssr126611	transcription start site region 126611	1070 bp upstream
Tssr126612	transcription start site region 126612	1095 bp upstream
Tssr129761	transcription start site region 129761	346 bp upstream
Tssr129762	transcription start site region 129762	329 bp upstream
Tssr129763	transcription start site region 129763	302 bp upstream
Tssr129764	transcription start site region 129764	8 bp upstream
Tssr129765	transcription start site region 129765	54 bp downstream
Tssr129766	transcription start site region 129766	624 bp downstream
Tssr129767	transcription start site region 129767	666 bp downstream