rs264205946 SNP Detail

Summary

• ID
  rs264205946
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:70442221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGTAGGA TATGTTCAGT
  GCTGTGAATG TGATGGGGTG GGGGAGGGCA GGGTGGATCA TGTGAGGAGC TCGGGAATGT
  CAGGACTGTG TACAGCAAGG GGTCATATGG ACAGCACAGG AGCTGTGGGA AGGGTACAGA
  GGAGGCCTGC AGGGCCTTAT TTTCTGTGCT CACATCCTGC TCAGGCATGG ACAAGGAGAC
  K
  AGGAAGGCTA GGGTCAGTAA GTCTCTGGTC TGTATTTGTG GGGATTCCTT CTGACATCTG
  AGCAGCCTTT TGGGGACCCA GCCAATCCCT GACTTTGTGT GTGGGGAGGG GAGGCTGAGG
  TGCAGCCCAC CAGCTGGATT CAATTAAAGC TCTTACCAAA AAGCTAACCA TACAAACACA
  CACCCGTTCC CGCCACCCGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391461213	MGP_WTSI_14_70604579	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264205946					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391461213	MGP_WTSI_14_70604579	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70442221 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi6688	CpG island 6688			855 bp proximal
Gm26908	predicted gene, 26908			within coordinates
Gm49417	predicted gene, 49417			552 bp upstream
Rr494880	regulatory region 494880			642 bp distal
Rr494881	regulatory region 494881			within coordinates
Rr494882	regulatory region 494882			465 bp proximal
Rr494883	regulatory region 494883			563 bp proximal
Rr494884	regulatory region 494884			1240 bp proximal
Rr494885	regulatory region 494885			1376 bp proximal
Sorbs3	sorbin and SH3 domain containing 3			Intron
				Noncoding-Transcript-Variant
Tssr126403	transcription start site region 126403			1365 bp downstream
Tssr126404	transcription start site region 126404			399 bp upstream
Tssr126405	transcription start site region 126405			453 bp upstream
Tssr126406	transcription start site region 126406			472 bp upstream
Tssr129550	transcription start site region 129550			1319 bp upstream
Tssr129551	transcription start site region 129551			1306 bp upstream
Tssr129552	transcription start site region 129552			1292 bp upstream
Tssr129553	transcription start site region 129553			1054 bp downstream
Tssr129554	transcription start site region 129554			1101 bp downstream
Tssr129555	transcription start site region 129555			1213 bp downstream
Tssr129556	transcription start site region 129556			1266 bp downstream
Tssr129557	transcription start site region 129557			1310 bp downstream
Tssr129558	transcription start site region 129558			1339 bp downstream