rs264206401 SNP Detail

Summary

• ID
  rs264206401
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156079320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTCTCCTCA TCATTCCGGG
  GCAAATCCTT GAGCATTTCC CAGAATTCTC TCTACCCCTG CCAGATGTCC CACCTCCTAT
  TCTCTGCCTT AGCTCATTAA CCATAGGCTT TTTTATTGAC AGGTGATGCT TATAATAGAT
  TCTCTACAGC AAAGGTCAGA TGCCTTAACC AAGGTCACAG AGCTCTGTGG TCAAGCTGGG
  R
  TCTGGAGAAT GAGTGACCGC AGCCGTCCAA TACACACTGG AATAGTGATT AGGGAGGAAT
  GGAGTCAGGT TTACGTTGTT GTGTTGTTGG TGTGTGGGGT TAGGGTACAG GAAGTGCTGC
  AACTTTAGCC TGGCCAAGTA CATTTCTCCA GTTTCTTTTT TAAAAAGTAA AAACATCATT
  TGTTGTTTTC CTTTTTCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363809100	MGP_WTSI_4_155368972	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G	G	G	G	A	G	G	A	A	A	A	G	A	G	G	G	G	A	G	G	G	G	A	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264206401					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G	G	G	G	A	G	G	A	A	A	A	G	A	G	G	G	G	A	G	G	G	G	A	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363809100	MGP_WTSI_4_155368972	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156079320 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15496	CpG island 15496	1026 bp distal
Rr100725	regulatory region 100725	319 bp distal
Rr377473	regulatory region 377473	490 bp downstream
Sdf4	stromal cell derived factor 4	within coordinates
Tssr1404	transcription start site region 1404	1917 bp downstream
Tssr40749	transcription start site region 40749	1676 bp downstream
Tssr40750	transcription start site region 40750	1567 bp downstream
Tssr40751	transcription start site region 40751	1547 bp downstream
Tssr40752	transcription start site region 40752	1408 bp downstream
Tssr40753	transcription start site region 40753	1476 bp upstream