rs264230044 SNP Detail

Summary

• ID
  rs264230044
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:68515010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCATCTT CCATCGCCCG
  CGCGGGGCTC CGGGCCGCGG GGAACCGGGC TGGGCGCGCG AGTGCGGGCG GCTCTTTGTT
  GCGCGCCCCG GGACGGACAG CCGTGGCCCA CGGCGGCGGC GGCGGCAGCG GCGGCGGCAG
  CGCGCACCCG GGCGTTAGCG GCGGAGCCCG CGGCGGACAC CCGGGCCGGC CCCCGGCAAC
  R
  TCAAGGCGAA GGCGGCGGGG GCGGCGCCCG GCACGGAGGC GGAGGCGGCG TCGGCGGAGG
  CTCGGCTCGG CTCGGCTCGG CTCGGCGGAG TAGCGTCCTG CAGCCCTCTG CTGCCTGTTG
  CTTTGTCTCC TTCCGCAACA CCCCCTCCCC CGAGAAAAGT GAGAGGCGCG CTCACGGGCG
  TTTCCTCCCC GAGAGCGCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss375054716	MGP_WTSI_8_70586257	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs264230044					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375054716	MGP_WTSI_8_70586257	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:68515010 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20399	CpG island 20399	within coordinates
Psd3	pleckstrin and Sec7 domain containing 3	within coordinates
Rr664367	regulatory region 664367	142 bp distal
Rr664368	regulatory region 664368	within coordinates
Tssr81474	transcription start site region 81474	982 bp upstream
Tssr81475	transcription start site region 81475	14 bp upstream
Tssr81476	transcription start site region 81476	86 bp downstream