rs264234197 SNP Detail

Summary

• ID
  rs264234197
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12767204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACTTGGGAG GCAGAGGCAA GTGGATTTCT GAGTTCGAGG
  CCAACCTGGT CTACAGATGA GTGCCAGGAC AGCCAGGGTT ACATAGAGAA ACCCTGTCTC
  C
  CCCCCCCCCC CCAAAAAGAA TCTGTCTTTG GCCAGGGATA TGACTGAGGT AGGGCCCTGC
  CCCATATTTA CAAAATCCTG GAGTCCCTGG CAGTGAATT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss370654935	MGP_WTSI_7_13618626	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs264234197					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370654935	MGP_WTSI_7_13618626	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12767204 () rs orientation: forward

Symbol	Name	Function Class
Chmp2a	charged multivesicular body protein 2A	within coordinates
Cpgi18334	CpG island 18334	964 bp proximal
Rr368233	regulatory region 368233	1366 bp upstream
Tssr64534	transcription start site region 64534	1587 bp upstream
Tssr70642	transcription start site region 70642	675 bp downstream
Tssr70643	transcription start site region 70643	742 bp downstream
Tssr70644	transcription start site region 70644	846 bp downstream
Tssr70645	transcription start site region 70645	1124 bp downstream
Tssr70646	transcription start site region 70646	1327 bp downstream
Tssr70647	transcription start site region 70647	1426 bp downstream
Tssr70648	transcription start site region 70648	1445 bp downstream
Ube2m	ubiquitin-conjugating enzyme E2M	1843 bp downstream