rs264238179 SNP Detail

Summary

• ID
  rs264238179
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126624225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGAGGAA GCTGGCTTCC
  TACCTCACAT TTGAAGGGCC GCTCTGTTGA GTGCACTTGT CTGACGTGAC TGTTGAGGTG
  ATCCGGCCTA GGGATATGTT GAGGTGGGAG GGGGTGTGTG TTAGGGCTTA GGCTCCAAGG
  TAAGGTGTGC CTCAAATCTA CCTAGGTTCC TCCAAAATGC CTCTGCAAAG GTCCCAGCGT
  Y
  TCCCCCTCAG CTTCAGTCCT CAGGCAGGAA AGCCCTCAAA CCAAGATTCC TCTTCTGCCC
  AGAGGCTGCT TTCCTTCAGC CCAGAGACCC ACCTCTTCTA AAGTACCACC CCCTGTTCCT
  AGCAACTTCC CTCCTCCCTG GGAGTGGTTC CTGTCCCCAG GAACGGGAGC CGCCTCCCCA
  CCAGCCAAAG ACAGGCCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373079243	MGP_WTSI_7_134168567	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264238179					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373079243	MGP_WTSI_7_134168567	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126624225 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19727	CpG island 19727	127 bp proximal
Gm31749	predicted gene, 31749	218 bp upstream
Maz	MYC-associated zinc finger protein (purine-binding transcription factor)	within coordinates
Rr368440	regulatory region 368440	504 bp downstream
Tssr74905	transcription start site region 74905	126 bp upstream
Tssr74906	transcription start site region 74906	28 bp downstream
Tssr74907	transcription start site region 74907	93 bp downstream
Tssr74908	transcription start site region 74908	493 bp downstream
Tssr74909	transcription start site region 74909	790 bp downstream
Tssr74910	transcription start site region 74910	824 bp downstream
Tssr74911	transcription start site region 74911	892 bp downstream
Tssr74912	transcription start site region 74912	1081 bp downstream
Tssr74913	transcription start site region 74913	1174 bp downstream
Tssr74914	transcription start site region 74914	1195 bp downstream
Tssr74915	transcription start site region 74915	1243 bp downstream
Tssr74916	transcription start site region 74916	1280 bp downstream
Tssr74917	transcription start site region 74917	1360 bp downstream
Tssr74918	transcription start site region 74918	1410 bp downstream
Tssr74919	transcription start site region 74919	1432 bp downstream
Tssr74920	transcription start site region 74920	1471 bp downstream
Tssr74921	transcription start site region 74921	1514 bp downstream
Tssr74922	transcription start site region 74922	1574 bp downstream
Tssr74923	transcription start site region 74923	1668 bp downstream
Tssr74924	transcription start site region 74924	1743 bp downstream
Tssr74925	transcription start site region 74925	1929 bp downstream
Tssr74926	transcription start site region 74926	1974 bp downstream