rs264241169 SNP Detail

Summary

• ID
  rs264241169
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:38718734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACACCTTC TCTGGGGAGA
  TACAAACCCG GCACGGTGCA TGAGGGGCAA TCCCGGCCTC GCGGGACCCA GGGAGTTGCA
  GTCAGTCAGC GCTGGGGGTC CCGAGCCGGT CACCTGTTGC CGCCTGCGGG CACGACCGGC
  GGACTTCCCG GGCGGCGGCG GTCAGGCCCC GGGGTCCCTC CCGCAGCTCG GCCGGCCCAG
  Y
  CCACAACGCC CACTCCGGGG TCCCCGGCCC GCACCCCCGC GGCCGTGCAA GACCCCGGCC
  GCGCCCTCCC GCCTGCACCC GACCCCAGAA GCCGGCGGCC GCGCGCGGAG GCCCACGCAC
  TCACTGATCT CGTACGGCAT CCTCGCCCAC TTGTTACGGC GCTGCGCTCG AGTGGAACCT
  CGCAGTGGCC GAGCCCAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss364599128	MGP_WTSI_5_38952630	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs264241169					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364599128	MGP_WTSI_5_38952630	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:38718734 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15817	CpG island 15817	within coordinates
Gm57313	predicted gene, 57313	421 bp upstream
Gm72219	predicted gene, 72219	1986 bp upstream
Rr399063	regulatory region 399063	287 bp upstream
Tssr46063	transcription start site region 46063	504 bp upstream
Tssr50812	transcription start site region 50812	250 bp upstream
Tssr50813	transcription start site region 50813	220 bp upstream
Tssr50814	transcription start site region 50814	163 bp downstream
Tssr50815	transcription start site region 50815	234 bp downstream
Tssr50816	transcription start site region 50816	267 bp downstream
Tssr50817	transcription start site region 50817	291 bp downstream
Tssr50818	transcription start site region 50818	396 bp downstream
Tssr50819	transcription start site region 50819	1824 bp downstream
Tssr50820	transcription start site region 50820	1853 bp downstream
Wdr1	WD repeat domain 1	within coordinates