rs264249856 SNP Detail

Summary

• ID
  rs264249856
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:23935514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CTGCCCAAGA AGACCGAGAG CCACCACAAG GCCAAGGGGA AGTAATCTGG
  S
  GATTGTCTGT ACTGCCCAGT TGAAAGTTAA CCAAAACAAA GGCTCTTTTC           
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324291409	CHEV_13_23843400	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264249856					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23935514 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5374	CpG island 5374	within coordinates
Gm54518	predicted gene, 54518	16 bp upstream
H2ac4	H2A clustered histone 4	mRNA-UTR
H3c2	H3 clustered histone 2	814 bp upstream
Rr403663	regulatory region 403663	391 bp downstream
Rr403664	regulatory region 403664	554 bp upstream
Rr475938	regulatory region 475938	395 bp distal
Rr475939	regulatory region 475939	138 bp distal
Rr475940	regulatory region 475940	78 bp proximal
Rr475941	regulatory region 475941	246 bp proximal
Tssr118860	transcription start site region 118860	445 bp downstream
Tssr118861	transcription start site region 118861	413 bp downstream
Tssr118862	transcription start site region 118862	324 bp downstream
Tssr118863	transcription start site region 118863	810 bp upstream
Tssr121747	transcription start site region 121747	664 bp downstream