rs264263489 SNP Detail

Summary

• ID
  rs264263489
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35253888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACTGCCT TGTGCCTTTT
  CTCATCAAAC CCCACCCCAA CACTGTGGTA TTGGAGAGCA AACCTTATAC TTGCTCGGCA
  AGTGCTCTGT ATTTGAGCTG CGCACCCCCT ACCTCTGTCT TAAGCCTTAG CTGCAAACAT
  CCAGTTCTGT ATTTTGAGTG TAGTTTCTCT CCTGACCCAC ATGGGTCTCC TATCTTGTAA
  W
  TTTAAAGAAA GTCACGTTAG TGATAGTACA GCTATCCCTG CTTGTTGAAG GCAGCAGTGG
  TCTGAGTACT GGCTGAGACT TAGACAGGAT GAAGGAATAG GATGAATAGG ATTCTTAACA
  GGAGTAAGTG GCCTGAGCGT TGGCTAAGCA TTTGGAGGCC TAGAGGTTTA AAGGAGATCT
  ATTTATTGAG TACTGAAGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325583042	CHEV_18_35280489	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264263489					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35253888 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9834	CpG island 9834	1076 bp distal
Ctnna1	catenin alpha 1	within coordinates
Gm46617	predicted gene, 46617	1996 bp upstream
Tssr150509	transcription start site region 150509	1932 bp downstream
Tssr150510	transcription start site region 150510	1909 bp downstream
Tssr150511	transcription start site region 150511	1882 bp downstream
Tssr150512	transcription start site region 150512	1406 bp downstream
Tssr150513	transcription start site region 150513	1017 bp downstream
Tssr150514	transcription start site region 150514	995 bp downstream
Tssr150515	transcription start site region 150515	599 bp downstream