rs264296846 SNP Detail

Summary

• ID
  rs264296846
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:81356719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCTCGTG CGGCCGCTCC
  GACGGGGCCC CTGGCGTTCG CTCTCCGCCC GCTCGGCAGC TGCTCCCCGC GCGGCACATG
  CGGCGGCCCG AGTGCGCCCG GCTCAGCCCC GGCGCCGTTC CATTCCGCCG GCTGCGCGGC
  TGCTCTGCCG GTGTCGGGGC CGCCGCCAGG CGCGGGCGGG CGGGAGGGCG GGGGCTGGGC
  R
  GCCGGGGGCT GGGCGGCCGC GCTCGGGCGG AGCCGCCGGT CCCTCCCGCC CGCTCCTTAC
  GTAACCTCGT GGCCCCCGGG CCGCCGCCGC CCGCCTGGAG CTGGGGGCGC GGCAGCGTGT
  GCAGCGTCCC CCGCGCTGCC GCGCAGTCGC CGCTTCTTCC AGCAGCCCCC TCCTCTCCTG
  TGTCGACCCC GCACCCGCGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss372074823	MGP_WTSI_7_88851857	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs264296846					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372074823	MGP_WTSI_7_88851857	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:81356719 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19358	CpG island 19358	within coordinates
Gm32579	predicted gene, 32579	1181 bp downstream
Homer2	homer scaffolding protein 2	46 bp upstream
Rr650185	regulatory region 650185	173 bp distal
Rr650186	regulatory region 650186	within coordinates
Tssr73349	transcription start site region 73349	102 bp upstream
Tssr73350	transcription start site region 73350	70 bp upstream
Tssr73351	transcription start site region 73351	7 bp upstream
Tssr73352	transcription start site region 73352	111 bp downstream