rs264303401 SNP Detail

Summary

• ID
  rs264303401
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:31180664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCTAGGT ATCTGGGCAC
  AAACAAAAGC AAACATCTCA TAATAGCAGG GGGTTTTTTG GTCTGTTTTG TTTTGTTTTT
  GGCAGTCTTT TCTGTTCTTG AGAATGGTGA TTTTAGGGCT GGAGAGATAG CTAGCTGGTA
  ACATGCTTGC TTTGCAATCA TGGGGACTTG AATTCAATCC CTAGAACACC CCCCCCCCCC
  M
  CACACACACA CACAAAAGCC AAAGGGGGCC CTACAGAGAC AGCTCAGTAG TTAAGAGCCC
  TGACTGCTCT TCCAGAGGAT CTGGGTCCAG TTCCCAGTAC CCACATGGCA GCTCAAGGTA
  ACCCCAGTTC CAGGCAATCA GATGCCCTCT TCTGAGCATC AGATACTCTT GTGGTGCACA
  GACACCCATG CAGGCAAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377098492	MGP_WTSI_9_31076953	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264303401					SNP	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377098492	MGP_WTSI_9_31076953	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:31180664 () rs orientation: forward

Symbol	Name	Function Class
Gm51733	predicted gene, 51733	1542 bp downstream
Gm69959	predicted gene, 69959	within coordinates
Rr194404	regulatory region 194404	1137 bp proximal
Rr208622	regulatory region 208622	1538 bp proximal