rs264314690 SNP Detail

Summary

• ID
  rs264314690
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7629743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCGGGGCA GATCGTGGAG
  TATACAGAAA CTGGTTTGCT GTAGTTGAAC TTGGAAACTG ATTAAAAGCT GAATTGGGGA
  TTGTTGACTC GGTCGCGGAG GGATGAATGT GAGGGCATAC ATACTGTCAG GTGAGGCACT
  GATTTTAAGG AAATCCTGGG GTTTCCCCCC TCCCCCTTTT AGTGTGTGTG GGGGGAAAAT
  Y
  CAGGGAGGCA GAGGTGTTAT TTGGGGCACC TAGTGATTCC CAGTAGCCGG TGCTGTGTTT
  TTGGGAATAG CACGAGTCTA AAGGAGTTAG GGGGAGGTCT CCGATCTGCC GGGAGTGTGT
  GTGAATAATT GAGCGAAGCA ACTTGCTGGG CCCAATCGGT TCACTGTTGC TACCCCGCTC
  AGCTGGCGTC TGTACAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325888245	CHEV_X_7340630	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264314690					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7629743 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22579	CpG island 22579	431 bp distal
Rr394688	regulatory region 394688	781 bp upstream
Rr689655	regulatory region 689655	799 bp distal
Rr689656	regulatory region 689656	within coordinates
Rr689657	regulatory region 689657	594 bp proximal
Tfe3	transcription factor E3	within coordinates
Tssr160423	transcription start site region 160423	942 bp downstream
Tssr160424	transcription start site region 160424	815 bp downstream
Tssr160425	transcription start site region 160425	775 bp downstream
Tssr160426	transcription start site region 160426	695 bp downstream
Tssr160427	transcription start site region 160427	667 bp downstream
Tssr160428	transcription start site region 160428	606 bp downstream
Tssr160429	transcription start site region 160429	590 bp downstream
Tssr160430	transcription start site region 160430	447 bp upstream
Tssr160431	transcription start site region 160431	746 bp upstream
Tssr160432	transcription start site region 160432	772 bp upstream
Tssr160433	transcription start site region 160433	806 bp upstream
Tssr160434	transcription start site region 160434	819 bp upstream
Tssr160435	transcription start site region 160435	894 bp upstream
Tssr162815	transcription start site region 162815	237 bp downstream