rs264327752 SNP Detail

Summary

• ID
  rs264327752
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127689413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTAGTCT AGTCTTACAG
  ATATCTGATG TTATAATTTC CCTTAGTCTT CTCAATGATA TCCAATTCTG AGAACTTTAA
  AAGTACCCAG TTTCCTTATT ATGTCTGTTA CTAAAGCTTC CTTCCCTTTG GTGCTCACAG
  CAGGCAATTT TCTTTTTTTT TTTTTCCTTT CCACTTCTAA AATGAAGTTC AGCTCTGCTC
  S
  GTGGTGCTGT GAAACTTGCT CTGGGAGAGT CCCGGTGTCA CCTAGGCACC GACCCGTGCT
  TCCCGATCCT CTGTGCGGGC CGTCCGCCCA CCCCGTCCAG GGCGCGTGCA GTGCTCGGAA
  TTCGAGCGCA CGGCGCGCCC ACGTAGCGCA AGTTGCCGGG TGGTTTTGAG GTGAGGCTCC
  GGAGGGCATT TCCACCGAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320957989	CHEV_3_127598682	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264327752					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127689413 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	within coordinates
Fam241a	family with sequence similarity 241, member A	Intron
Rr398009	regulatory region 398009	509 bp upstream
Rr584895	regulatory region 584895	1457 bp distal
Rr584896	regulatory region 584896	234 bp proximal
Rr584897	regulatory region 584897	514 bp proximal
Tssr35606	transcription start site region 35606	1156 bp upstream
Tssr35607	transcription start site region 35607	251 bp upstream
Tssr35608	transcription start site region 35608	456 bp downstream
Tssr35609	transcription start site region 35609	483 bp downstream
Tssr35610	transcription start site region 35610	507 bp downstream