rs264346073 SNP Detail

Summary

• ID
  rs264346073
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24340136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCCAGATC CCAGCTAAAG
  GAGGCTCTGG CACTCTAGGG TCCTGGTTGT CTGCAGTTCT GTTGACTGTG GTTGCTGGCG
  CGATGCTGTG AATGTCTCAT CTCGAAAAGT CCATCTCACT TTGTTTCCCT GGCCCCGTGG
  TACCAACTCT TTCCATTTCT CACTTGACTG GACTGGCTCC GCCCCCATCC TTCAGCATTC
  Y
  CAGTTCCGAC TGCACTGGTT TGCAGCTTCG GAAAACAGTC CTCTGTTGTA AATATTCCGC
  TCGGGTGGCC CTACTTTTTT GATGCGGCCA CAGCATTCCC CCTGATGGTG ACCAGGACAG
  AGGGAAGAGA CGTCTACTGG CTGAGAGAGG CCCAGAGAGT CCACGGCAAG CCTCCTCTTC
  CCGTTTTCCT GACCAGGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322120751	CHEV_7_25425730	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264346073					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24340136 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18555	CpG island 18555	1569 bp distal
Cpgi18556	CpG island 18556	413 bp distal
Lypd3	Ly6/Plaur domain containing 3	within coordinates
Rr155455	regulatory region 155455	1665 bp proximal
Rr167239	regulatory region 167239	1735 bp distal
Rr172826	regulatory region 172826	within coordinates
Rr172827	regulatory region 172827	1653 bp proximal
Tssr65020	transcription start site region 65020	1928 bp downstream
Tssr65021	transcription start site region 65021	1914 bp downstream
Tssr65022	transcription start site region 65022	494 bp downstream