rs264379940 SNP Detail

Summary

• ID
  rs264379940
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:120567938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAGCACT CCAGGAGAAT
  CAAGAAGATG GGGTTGGGTG GGGGGCTCCA AGAAACAAAG GCAGAGGGGC AGTGGGTTCG
  CCTCAGCTGG CAGCCTACAT GACTCCTGTC TTCTCTGGGC CCTTCCTCAT CTCTCTGCTC
  TCTGGGAGCA TCTAGGCCCC CAGGCAAACA GGCTGGGCAC TGCCACAGAG CTTCTTTTAG
  R
  GGCTTCAAGA ATCTCTCTCC ACAGGCCTAG GAGGCCCCGG GTGTGATCCA GTCTGCTTGG
  TCCTGGTTGC TACACTACAC TACACTACAC TACACTACAC TACACTACAC TGCAGGTACT
  CAGTCTCCTT GACAAAAGAG CGACCAGGTG ATGTACCCAC ATACAGAGGC TACCCAAGTT
  GCGGGGAACC GTCTCCCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366475030	MGP_WTSI_5_120879882	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264379940					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366475030	MGP_WTSI_5_120879882	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:120567938 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16489	CpG island 16489	1424 bp distal
Cpgi16490	CpG island 16490	986 bp proximal
Lhx5	LIM homeobox protein 5	1826 bp upstream
Lhx5as1	LIM homeobox 5, antisense 1	within coordinates
Rr619308	regulatory region 619308	1716 bp distal
Rr619309	regulatory region 619309	508 bp distal
Rr619310	regulatory region 619310	within coordinates
Rr619311	regulatory region 619311	810 bp proximal
Rr619312	regulatory region 619312	1713 bp proximal
Rr619313	regulatory region 619313	1870 bp proximal
Tssr52923	transcription start site region 52923	1884 bp downstream