rs264380230 SNP Detail

Summary

• ID
  rs264380230
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137540086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCCTCCC CCACTCCCTC
  CACTTCTCCC CCCTTCTCTC TTTCTTCCTT TCTCCTGAGA CAATCTCACT ATGTATTCAC
  TCAAACTCAT AGACACACTG CATCTTCTTC CCTAGTGCTG GGATTAAAGG AATGCTCCGC
  CATGCCTGGC TTAGCGAGGT TTCCTATGCA GCCTAGGACA CTCGTGTCTA GGCTGGTACA
  G
  CCTGCCTAGG GGGTGGTACA GCCTGCCTAG AGGGTGGTAC AGCTCACAGT AGACCAATTC
  CACCTGCTTC AGGTAATGAG CAAAACATAA TCCACAGACA TGCCCATAAG GTAATATGAT
  CAAGACAGTT TCTTAGCTGG GCGTGGTGGT GCACGCCTTT AATCCCAGCA CTCAGGAGGC
  AGAGGCAGGT GGATTTCTGA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss359894204	MGP_WTSI_3_137497289	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs264380230					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359894204	MGP_WTSI_3_137497289	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137540086 () rs orientation: forward

Symbol	Name	Function Class
Rr79447	regulatory region 79447	1516 bp proximal
Rr82645	regulatory region 82645	275 bp distal
Rr375792	regulatory region 375792	within coordinates
Tssr31910	transcription start site region 31910	396 bp downstream