rs264389556 SNP Detail

Summary

• ID
  rs264389556
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:75237023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCATTGTT AATCACATGT GAACAAGGTA ATCAGGAAGG
  ACCAGGACGA GGACTCTAGA ATTTAAGACA GCTTACAGTT ATATAAGCGG AACTCTTTTT
  K
  TTGTTGTTGT TGCTCCTGTT GTTTGTTGCA CTTGCTGGGC TTATAGCTTT CCCAGTCAAG
  CCAGGCAGAA ACGTCGTTGC AGACAGCTTT GCAATGAGA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ
ss371935141	MGP_WTSI_7_82732161	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ
rs264389556					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371935141	MGP_WTSI_7_82732161	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:75237023 () rs orientation: forward

Symbol	Name	Function Class
Akap13	A kinase anchor protein 13	within coordinates
Rr400375	regulatory region 400375	702 bp upstream
Rr649259	regulatory region 649259	1560 bp distal
Rr649260	regulatory region 649260	within coordinates
Rr649261	regulatory region 649261	1971 bp proximal
Tssr67241	transcription start site region 67241	1561 bp downstream
Tssr67242	transcription start site region 67242	1087 bp downstream
Tssr67243	transcription start site region 67243	1055 bp downstream
Tssr67244	transcription start site region 67244	1040 bp downstream
Tssr67245	transcription start site region 67245	1003 bp downstream
Tssr67246	transcription start site region 67246	971 bp downstream
Tssr67247	transcription start site region 67247	942 bp downstream
Tssr67248	transcription start site region 67248	899 bp downstream
Tssr67249	transcription start site region 67249	863 bp downstream
Tssr67250	transcription start site region 67250	827 bp downstream
Tssr73048	transcription start site region 73048	613 bp downstream