rs264393935 SNP Detail

Summary

• ID
  rs264393935
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:51178946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACAGGCTG CCCAGCAGGC TTCTCTCACT AGTTCAGCTA
  GGGATAAGGG CTTCCTACTA CTGTGAGCCA GAGGGTGCTC GCCACCCCCA ACCCCCTACC
  Y
  CCTGCTGGTT TCCCTCCTTG CCACCATGAA GTCTGTCTAC CATCAAGCTG GCTTCAATCA
  CCTGTTCTGA GGATGCCGCC TTTCCTTCTA GGACCCCAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323667623	CHEV_11_51101621	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264393935					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:51178946 () rs orientation: forward

Symbol	Name	Function Class
Col23a1	collagen, type XXIII, alpha 1	1801 bp upstream
Cpgi2834	CpG island 2834	1479 bp proximal
Rr446561	regulatory region 446561	1354 bp proximal
Tssr101277	transcription start site region 101277	1619 bp upstream
Tssr101278	transcription start site region 101278	1849 bp upstream