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rs264394245 SNP Detail
Summary
  • ID
    rs264394245
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr17:84494726 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCTACCGCCT TCTTGTCCAG
    CATGTTGTTC AGATTGAGGT TTGCCAGGGA TTTCTCCGTC TGCCAAAGGG AGGGGAGCGG
    GAGCGGGATG AAAATCGGAT GGGGAAGAGA GTCGGGGCTA ACTGCAGAGT GAACGCCCTA
    GTCCCAACTG CCCACTTGTT GGGGTTTCTG GTGGGATCCG ATTCAGCCTC CACCGCTACA
    M
    TCGCAAAACG CAGGCCGGAG AGAGTGGAGG ACGCCCACCC CGGCCGCTCC GGGTCTAGCC
    ATGTGATCCT GGGCCCGTGG CCACGGGGTG GGCGGCGCAA ACGCTGTCCG GGAAGTCCCG
    GCAGCGTGGC CGCGGTCGGT TCGGGAGGAG CACGGCTGCT CCAGCCGCTA CTCGCTCTCT
    CCACGCCCAC AGTCGCAAGC                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss399282280 MGP_WTSI_17_84586638 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs264394245 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss399282280 MGP_WTSI_17_84586638 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:84494726 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi9565 CpG island 9565 46 bp distal
Cpgi9566 CpG island 9566 313 bp proximal
Gm56881 predicted gene, 56881 849 bp upstream
Rr340271 regulatory region 340271 within coordinates
Rr405496 regulatory region 405496 575 bp upstream
Tssr146044 transcription start site region 146044 1537 bp downstream
Tssr146045 transcription start site region 146045 181 bp downstream
Tssr146046 transcription start site region 146046 1306 bp upstream
Tssr149650 transcription start site region 149650 1711 bp upstream
Tssr149651 transcription start site region 149651 1657 bp upstream
Tssr149652 transcription start site region 149652 1277 bp upstream
Tssr149653 transcription start site region 149653 1225 bp upstream
Tssr149654 transcription start site region 149654 1101 bp upstream
Tssr149655 transcription start site region 149655 957 bp upstream
Tssr149656 transcription start site region 149656 916 bp upstream
Tssr149657 transcription start site region 149657 686 bp upstream
Tssr149658 transcription start site region 149658 643 bp upstream
Tssr149659 transcription start site region 149659 607 bp upstream
Tssr149660 transcription start site region 149660 581 bp upstream
Tssr149661 transcription start site region 149661 518 bp upstream
Tssr149662 transcription start site region 149662 478 bp upstream
Tssr149663 transcription start site region 149663 409 bp upstream
Tssr149664 transcription start site region 149664 366 bp upstream
Tssr149665 transcription start site region 149665 294 bp upstream
Tssr149666 transcription start site region 149666 232 bp upstream
Tssr149667 transcription start site region 149667 132 bp upstream
Tssr149668 transcription start site region 149668 108 bp upstream
Tssr149669 transcription start site region 149669 46 bp upstream
Tssr149670 transcription start site region 149670 439 bp downstream
Tssr149671 transcription start site region 149671 529 bp downstream
Tssr149672 transcription start site region 149672 641 bp downstream
Zfp36l2 zinc finger protein 36, C3H type-like 2 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory