rs264398687 SNP Detail

Summary

• ID
  rs264398687
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:26312944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCAGGAG CTGCTTTGGC
  CCAGAGCTGC TTCCATTACA GAGGCTGATA GGCAGCTGTT TTCCCTCAGA GGATTCTGTG
  GTCACTGCAG GTGCAGGGAA AAGACAGTTA TTTAAAGGAA TGGGGGCAGG TAGGGGTGGT
  TACCATAGGC TGTATGGTAG AAATTTTTAA AATTTTAGGT AAATGTTTCC TTGCCATTTT
  Y
  CTCTAAGTAT TTGACGTATA GTACTCATGT AATCACCTGG AAAGTATTAT ATCTTGAACA
  AGTATGAGTT GAAAATATAG ATTCATGTTT TCTTTAGATT TTAAGTTTCA AACAGAAAAA
  GGGAATAAGT TTAGGTTTCC CCAGTCTTAG AGCTAATTTT GATGTAATCT TTAAAGCTAA
  TGTAACTTCT ACTTAGTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390595298	MGP_WTSI_14_27411275	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264398687					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390595298	MGP_WTSI_14_27411275	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:26312944 () rs orientation: forward

Symbol	Name	Function Class
Dennd6a	DENN domain containing 6A	within coordinates
Gm62986	predicted gene, 62986	114 bp upstream
Rr287848	regulatory region 287848	144 bp distal
Rr298616	regulatory region 298616	1344 bp distal
Rr298617	regulatory region 298617	744 bp distal
Rr298618	regulatory region 298618	78 bp distal
Rr298619	regulatory region 298619	457 bp proximal
Rr298620	regulatory region 298620	1058 bp proximal
Tssr124682	transcription start site region 124682	1637 bp downstream
Tssr124683	transcription start site region 124683	1190 bp downstream
Tssr127790	transcription start site region 127790	215 bp upstream
Tssr127791	transcription start site region 127791	155 bp upstream
Tssr127792	transcription start site region 127792	139 bp upstream
Tssr127793	transcription start site region 127793	112 bp upstream