rs264413301 SNP Detail

Summary

• ID
  rs264413301
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92108292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGG GAGGGAGGGA GGGAGGGAGG
  R
  AGGGCAAACG GAAGGAAGGA GAACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321611415	CHEV_5_92389459	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264413301					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92108292 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16049	CpG island 16049	1997 bp proximal
Gm43039	predicted gene 43039	1471 bp upstream
Rchy1	ring finger and CHY zinc finger domain containing 1	within coordinates
Rr367874	regulatory region 367874	919 bp upstream
Rr614524	regulatory region 614524	within coordinates
Rr614525	regulatory region 614525	1780 bp proximal
Tssr47269	transcription start site region 47269	1992 bp upstream
Tssr51828	transcription start site region 51828	1014 bp downstream
Tssr51829	transcription start site region 51829	1174 bp downstream
Tssr51830	transcription start site region 51830	1849 bp downstream
Tssr51831	transcription start site region 51831	1882 bp downstream