rs264444564 SNP Detail

Summary

• ID
  rs264444564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128176439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTCACAC TATTGATTTC
  CTTATGCAAT AAACCTTTCT TCCAGGAAAA AAAAAATGCC CTTTAAGATA CACTTAAAAG
  TTACAGTTCT ATTAGTCTTT AAGGCACAGA TGAGAAATGT CTTGAAAAAT AATCCCAGAA
  CAGGATGACT CAAGAACACT GGCTTTTCTT CCAGAGGACC TGGGTTCAAT TCCCATCACC
  Y
  ACATGGCAGC TCATGTCTGT AACTCCTGTT TCAGGGTTCC AAGGGTTCAT ACATACATAT
  ATATGTCATA ACACCAAAAC ACATAAATAA TTTTTTTTAA AAAACCAATG AGTTTTTGTG
  GATAAGTTAC CTGGATGCCC AAGAAATGAA ATCTTTTAAT AAGCTCTCCT GGCCGATGGC
  TAGTCACCTT GTTTGGCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370021600	MGP_WTSI_6_128149494	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264444564					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370021600	MGP_WTSI_6_128149494	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128176439 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18048	CpG island 18048	559 bp proximal
Gm10010	predicted gene 10010	within coordinates
Gm66766	predicted gene, 66766	828 bp upstream
Rr399953	regulatory region 399953	1031 bp upstream
Rr639207	regulatory region 639207	445 bp proximal
Rr639208	regulatory region 639208	839 bp proximal
Rr639209	regulatory region 639209	1096 bp proximal
Rr639210	regulatory region 639210	1243 bp proximal
Tssr63410	transcription start site region 63410	1076 bp downstream
Tssr63411	transcription start site region 63411	1098 bp downstream
Tssr63412	transcription start site region 63412	1100 bp downstream
Tssr63413	transcription start site region 63413	1122 bp downstream
Tssr63414	transcription start site region 63414	1162 bp downstream