rs264466922 SNP Detail

Summary

• ID
  rs264466922
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:4734474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCACCAGGC AAGAGTTATA GAAGGCGAGA
  CACTGTAAAC CACACACTGA CCAAAAAAAA GAAAAAAAAA AGGTTACTCT CTGCTGGGGA
  TGTGGGGAGC TAACGTTTGG TAGCTTTATT TTCATTAGAA GACCAATGTG AGAAAAAAAA
  W
  TTCTTTTAAA AAACTATCAT TCAAATACCT TTCCTGCACA CCACTTTTCA AGACTAGATC
  TAATGTGTAA AATAATGTCA ACCTCTATAG ACAGGTTATT GGATGAACTC CAGAGGCAAC
  GCACTGTCTT CAGAAATCAT TAAAGGAAGC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321727751	CHEV_6_4684474	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264466922					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4734474 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr378854	regulatory region 378854			within coordinates
Rr626051	regulatory region 626051			872 bp distal
Sgce	sarcoglycan, epsilon			Intron
				Noncoding-Transcript-Variant
Tssr59723	transcription start site region 59723			1947 bp downstream