rs264479536 SNP Detail

Summary

• ID
  rs264479536
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25113519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTCTTGT TCATCAGGAA
  GTTGGCTATG GTTTAGTTGC TCCAATTTAC AGGACACGGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTAT GTGTGTGTAA GATCACCAGA GCTTCAGGTC CAGGAATATA
  TGAACTATAG GCAAAAAGGG ATTCTTGAAC TGTGTTGGTC CAGGTTGGTG GAGTTCTTGG
  Y
  TCAAGGCAAA AGGAGAAAGC TGATAATGCC CACAGTCAAC ATTAAAGACG ATTGTGCCAG
  CCAGCTCACG AGGGAGGGGA GCGTTTATTT CTGAAACTTG CACTCTTAGA GGTGTTATTT
  CATGGCCTGT CTGCCCTGTC ATTTTTGAGC CTGTGCTGAG ATACATCATG GAGAGAGTGC
  ATAGTGGAGG AAACTGCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322121696	CHEV_7_26199113	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264479536					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25113519 () rs orientation: forward

Symbol	Name	Function Class
4732471J01Rik	RIKEN cDNA 4732471J01 gene	within coordinates
Cxcl17	C-X-C motif chemokine ligand 17	1208 bp upstream
Rr164493	regulatory region 164493	19 bp distal
Rr170192	regulatory region 170192	1768 bp distal
Rr170193	regulatory region 170193	520 bp distal
Tssr2143	transcription start site region 2143	1292 bp upstream
Tssr2144	transcription start site region 2144	1144 bp upstream
Tssr2145	transcription start site region 2145	1120 bp upstream
Tssr2146	transcription start site region 2146	1107 bp upstream
Tssr2147	transcription start site region 2147	1062 bp upstream
Tssr71243	transcription start site region 71243	1278 bp upstream
Tssr71244	transcription start site region 71244	1253 bp upstream
Tssr71245	transcription start site region 71245	1238 bp upstream
Tssr71246	transcription start site region 71246	1209 bp upstream
Tssr71247	transcription start site region 71247	1181 bp upstream