rs264494872 SNP Detail

Summary

• ID
  rs264494872
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30307225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCTTCCAC CACACTTCCT
  TTTTTGTGGT CCCAAAGAAA GTCTCAGGAG GAAGAAAATT TGAAAATCAA AAGAAGCACC
  ATTTTTGTGG CGCCCCCCCC CTAAATATAT GAACACGTGG AATTCAAAAC CAGACATTTA
  TTTTAAGTTA TACAAAATCT CTATGAATGT GTCGTTTTTG TTTGTTTTGT TTTTGTTTTT
  C
  GAGACAGGGT TTCTCTGTGA AGCTCTGGCT GTCCTGGAAC TCACTCTGTA GACCAGGCTG
  GCCTCGAACT CAGAAATCCA CCTGCCTCTG CCTCCCATGT GCTGGGAGTG CGCCACCACT
  GCCTGGCCTT ATGGATGTGT CTTAATCGAC TTTAGTGTTG ACATCAAGAC ATAGATAGTA
  GCTAGCACTC GGGAGGCAGA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353515421	MGP_WTSI_2_30272733	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264494872					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353515421	MGP_WTSI_2_30272733	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30307225 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11436	CpG island 11436	534 bp distal
Crat	carnitine acetyltransferase	1623 bp upstream
Gm16323	predicted gene 16323	1875 bp downstream
Ptpa	protein phosphatase 2 protein activator	within coordinates
Rr554312	regulatory region 554312	1700 bp distal
Rr554313	regulatory region 554313	1061 bp distal
Rr554314	regulatory region 554314	within coordinates
Rr554315	regulatory region 554315	1834 bp proximal
Tssr17115	transcription start site region 17115	1530 bp downstream
Tssr17116	transcription start site region 17116	1136 bp downstream
Tssr17117	transcription start site region 17117	1123 bp downstream
Tssr17118	transcription start site region 17118	1066 bp downstream
Tssr17119	transcription start site region 17119	992 bp downstream
Tssr23371	transcription start site region 23371	1845 bp upstream
Tssr23372	transcription start site region 23372	1803 bp upstream
Tssr23373	transcription start site region 23373	1784 bp upstream
Tssr23374	transcription start site region 23374	1764 bp upstream
Tssr23375	transcription start site region 23375	1708 bp upstream
Tssr23376	transcription start site region 23376	1653 bp upstream
Tssr23377	transcription start site region 23377	1601 bp upstream
Tssr23378	transcription start site region 23378	1589 bp upstream
Tssr23379	transcription start site region 23379	1505 bp upstream
Tssr23380	transcription start site region 23380	1439 bp upstream
Tssr23381	transcription start site region 23381	1168 bp upstream