rs264498215 SNP Detail

Summary

• ID
  rs264498215
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34611609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAAGAAT GAATACAGCC
  TGGGGGGGAG GGGGTGGAGT GGCAACAGCA TTGTGTCCCC TATTGCCCAC TAACTAGTTA
  CCTTTATTTA ACTGGGTTCT TCCTTTTATA AATAAGAAAA GGCTGCCAGA GGTGCTGGTG
  CACACCCAGG AGGAAGGCCG AGGCAGAGAG GCAGAGAAGC AGGTGAGTTT GAGGGTCAGC
  M
  TGGTCTATAG AGTGAGTTCC AGGATAGTCA GTAATACACA GAGGCCCTGT ATCAAACAAC
  AACAACAACA ACAACAACAA CAACCACAAC AACAACAACA ACACAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGATTGAT TGATTGATTG AGTGTATCCT AGTAAGAAGG CTGAGGCAAG
  TTGAATGTGG GTTCCAGTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ	ST/bJ
ss374219962	MGP_WTSI_8_35207509	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ	ST/bJ
rs264498215					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374219962	MGP_WTSI_8_35207509	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34611609 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20243	CpG island 20243	1836 bp proximal
Leprotl1	leptin receptor overlapping transcript-like 1	within coordinates
Rr661961	regulatory region 661961	1528 bp distal
Rr661962	regulatory region 661962	532 bp proximal
Rr661963	regulatory region 661963	1382 bp proximal
Tssr76860	transcription start site region 76860	1585 bp downstream
Tssr76861	transcription start site region 76861	789 bp upstream
Tssr76862	transcription start site region 76862	1870 bp upstream
Tssr76863	transcription start site region 76863	1905 bp upstream
Tssr76864	transcription start site region 76864	1920 bp upstream
Tssr80896	transcription start site region 80896	1692 bp downstream