rs264498376 SNP Detail

Summary

• ID
  rs264498376
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:116744172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGCCACCC GGAAATGAAT
  CTCCTGATTG GCCCATTCGG CCGTGTTGCG TAACGTCGCC GCCGCGCGCC CCGCCCCTCC
  CAGGTGCGCC TGCGCACCGC GCGGCGGGCG GGCGGAAAGC GCGCAGTCAC TGCGGTGGGG
  CGGGGGAGCA GCCAGAGAAG GCAGTTAGAA AGCCCGCCAA ATGCTCTACC GTGGGTGCGT
  Y
  CGCGAGAGCG CGGGGAAGGG GAAGAACGAG GCTCTATGGA GGGAGAAAGA GGAAGCGCGC
  CCCACCAGAG CCCCGCCCCT TCCCCACGCC AATGCCCGGG CTCCACGCGC CGTTCCGCCC
  AGCCTTCAGT CCCGCCTGTC AGAGCCGGTT CTTGCGCTCT CTTTTGCCTC TCTGTGTCCC
  GGGGCCACCT CACGTTCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384861323	MGP_WTSI_11_116714660	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264498376					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384861323	MGP_WTSI_11_116714660	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:116744172 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mfsd11	major facilitator superfamily domain containing 11			Intron
				mRNA-UTR
				Splice-Site
Rr403146	regulatory region 403146			51 bp downstream
Rr403147	regulatory region 403147			200 bp upstream
Rr460452	regulatory region 460452			within coordinates
Srsf2	serine and arginine-rich splicing factor 2			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr106000	transcription start site region 106000			1126 bp downstream
Tssr106001	transcription start site region 106001			772 bp downstream
Tssr106002	transcription start site region 106002			74 bp downstream
Tssr106003	transcription start site region 106003			111 bp upstream
Tssr106004	transcription start site region 106004			406 bp upstream
Tssr112004	transcription start site region 112004			1871 bp upstream
Tssr112005	transcription start site region 112005			1193 bp upstream
Tssr112006	transcription start site region 112006			1154 bp upstream
Tssr112007	transcription start site region 112007			1088 bp upstream
Tssr112008	transcription start site region 112008			982 bp upstream
Tssr112009	transcription start site region 112009			890 bp upstream
Tssr112010	transcription start site region 112010			247 bp upstream