rs264518504 SNP Detail

Summary

• ID
  rs264518504
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:47258146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACTGTTC TACACTACAC
  TTATCTATGG CTGGTACCTC AGGGAGGAGG GATGCCTTAG CACACACTGC CATCATACCA
  TGCTCTAAAA CACCACATCA TTGACTTTAT AGAACACACC AATTATAAAT AATCTAAAAG
  CAATTTAAAC AATTCTTATT AAGATTTATA ATTAAAGCCA AGGTTGTACT TAAATGACAC
  R
  CTCCCATAAG GTCTTAGAGC ACATACCACT TCAAATAATA AGTATGCCTT GTCCTCTTAA
  CCTAGATGGT ATTTATAAAA AAAAAAAAGA AGAAAGAAAA GAAAGAAAAG AAAAGAAATG
  ACAGTTTGGG AAGAGCACTT TAACCTTTAG GCCTGCTCCC AAGTCTGGCT GAGCTGTGGC
  CATCTGCACC ATTAAGCTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388517768	MGP_WTSI_13_47200038	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264518504					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388517768	MGP_WTSI_13_47200038	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47258146 () rs orientation: forward

Symbol	Name	Function Class
1700026N04Rik	RIKEN cDNA 1700026N04 gene	1676 bp upstream
Cpgi5551	CpG island 5551	648 bp proximal
Dek	DEK proto-oncogene	within coordinates
Rr479039	regulatory region 479039	1510 bp proximal
Rr479040	regulatory region 479040	1767 bp proximal
Tssr119626	transcription start site region 119626	902 bp upstream
Tssr119627	transcription start site region 119627	1731 bp upstream
Tssr119628	transcription start site region 119628	1743 bp upstream
Tssr122369	transcription start site region 122369	704 bp downstream
Tssr122370	transcription start site region 122370	851 bp downstream
Tssr122371	transcription start site region 122371	938 bp downstream
Tssr122372	transcription start site region 122372	1014 bp downstream
Tssr122373	transcription start site region 122373	1063 bp downstream
Tssr122374	transcription start site region 122374	1120 bp downstream
Tssr122375	transcription start site region 122375	1431 bp downstream
Tssr122376	transcription start site region 122376	1449 bp downstream
Tssr122377	transcription start site region 122377	1474 bp downstream
Tssr122378	transcription start site region 122378	1506 bp downstream
Tssr122379	transcription start site region 122379	1539 bp downstream
Tssr122380	transcription start site region 122380	1552 bp downstream