rs264519540 SNP Detail

Summary

• ID
  rs264519540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:121421109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCACATGC TGGGAGACAA
  ATGAAAGAAC TTAGGGAAGC GCAGAAAACC ATCACCACTA CAGGATCGTC CCAGAAGGCA
  GAATCTCGCC CACAGAGAAA CTGTAACTGA AAAGTACAGA AGTTACTATT CTTGAAAAGC
  CAGTAACTCT TTTGATTCTG TTTAAGGATG GTTTTCCTGA GCCAGTGAAA TGGCTCAGTG
  Y
  GCAAAGGGGC TTGCTGCCAA ATCTGATAAC CTAAGTTCAG TTCCCGGAAC CCACATGGAC
  TATCTGTGCC ACGGCATGTA TGAGACCGCG CGCGCGCGCG CACACACACA CACACACACA
  CACGTAAAAA CCATCAAAAA GTAGTCATTC CCCTTACTTC TAAATGGACA GGATGTATAT
  ACACACACCA AGTATATATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382025185	MGP_WTSI_10_121022260	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264519540					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382025185	MGP_WTSI_10_121022260	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121421109 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2289	CpG island 2289	1043 bp proximal
Rr402304	regulatory region 402304	668 bp upstream
Rr402305	regulatory region 402305	1522 bp upstream
Rr440247	regulatory region 440247	52 bp proximal
Rr440248	regulatory region 440248	1573 bp proximal
Tbk1	TANK-binding kinase 1	Intron
Tssr96043	transcription start site region 96043	1013 bp upstream
Tssr96044	transcription start site region 96044	1049 bp upstream
Tssr99623	transcription start site region 99623	669 bp downstream
Tssr99624	transcription start site region 99624	697 bp downstream
Tssr99625	transcription start site region 99625	718 bp downstream
Tssr99626	transcription start site region 99626	1506 bp downstream
Tssr99627	transcription start site region 99627	1526 bp downstream
Tssr99628	transcription start site region 99628	1609 bp downstream
Tssr99629	transcription start site region 99629	1637 bp downstream
Tssr99630	transcription start site region 99630	1665 bp downstream