rs264527427 SNP Detail

Summary

• ID
  rs264527427
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138103786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAACT TGTTTCTTTT GATCATAGTA
  Y
  TTCCCCACCC CACCACACAC ATCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320000115	CHEV_1_140072625	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264527427					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138103786 () rs orientation: forward

Symbol	Name	Function Class
Ptprc	protein tyrosine phosphatase receptor type C	340 bp upstream
Rr396335	regulatory region 396335	520 bp downstream
Rr396336	regulatory region 396336	140 bp upstream
Rr419677	regulatory region 419677	792 bp distal
Rr419678	regulatory region 419678	252 bp distal
Tssr233	transcription start site region 233	423 bp upstream
Tssr9153	transcription start site region 9153	1590 bp downstream
Tssr9154	transcription start site region 9154	411 bp downstream
Tssr9155	transcription start site region 9155	348 bp downstream
Tssr14018	transcription start site region 14018	1744 bp upstream
Tssr14019	transcription start site region 14019	1709 bp upstream
Tssr14020	transcription start site region 14020	1700 bp upstream
Tssr14021	transcription start site region 14021	850 bp upstream
Tssr14022	transcription start site region 14022	794 bp upstream
Tssr14023	transcription start site region 14023	737 bp upstream
Tssr14024	transcription start site region 14024	404 bp upstream
Tssr14025	transcription start site region 14025	388 bp upstream
Tssr14026	transcription start site region 14026	360 bp upstream
Tssr14027	transcription start site region 14027	344 bp upstream
Tssr14028	transcription start site region 14028	308 bp upstream
Tssr14029	transcription start site region 14029	284 bp upstream
Tssr14030	transcription start site region 14030	136 bp upstream
Tssr14031	transcription start site region 14031	112 bp upstream