rs264538646 SNP Detail

Summary

• ID
  rs264538646
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88890009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAATTACG GGCACGAGCC
  ACCAAGCTCT GGGTCAACAG TATTTTGTTC TGTTTGGCTT TGAGTTTTAA TAAGACCGGT
  CCTGTTCTGG AGGGATGATT GGTGACACCT CGGGGACACA GATGAATGTT CTCCAAAGCT
  CTGCTGCACT GTGCTAGGAC GTAGGCCCCG ACCAGGAGGG TGGGAATATT CCAGCCCCTG
  S
  GACAATTCAT CTGCAGAGTG CCTCTGAAAC TGCACCTGGT AGCCCTTGGG TCGTGCGTCG
  CTCGGGTCCG CGGGGTGTGG AGAGCATCAG AGTTCCCCAG GTCCCATAAT CACCTTTGGC
  TTCCAGCACC AGGAGGGAAG CCTCCCGCCC ACTGTCCGGC CCCCAGGGAC CCACGTGACT
  TCCTGAAGCC CCAGGGCGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384183749	MGP_WTSI_11_88860497	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	C	G	G	G	G	G	G	C	C	C	C	C	C	C	C	G	G	C	G	G	G	G	C	G	C	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264538646					SNP	G	G	G	G	G	C	G	G	G	G	G	G	C	C	C	C	C	C	C	C	G	G	C	G	G	G	G	C	G	C	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384183749	MGP_WTSI_11_88860497	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88890009 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3524	CpG island 3524	within coordinates
Gm11496	predicted gene 11496	within coordinates
Rr386439	regulatory region 386439	882 bp downstream
Rr402858	regulatory region 402858	82 bp upstream
Rr454274	regulatory region 454274	1681 bp distal
Rr454275	regulatory region 454275	within coordinates
Rr454276	regulatory region 454276	129 bp proximal
Rr454277	regulatory region 454277	725 bp proximal
Trim25	tripartite motif-containing 25	193 bp upstream
Tssr104062	transcription start site region 104062	202 bp upstream
Tssr104063	transcription start site region 104063	259 bp upstream