rs264562336 SNP Detail

Summary

• ID
  rs264562336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113879608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTATT ACTCTGGGTG ATTGCAGAAT
  Y
  TCTAGAGAAG CTGAGGCTCA GCACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355315554	MGP_WTSI_2_113874863	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264562336					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355315554	MGP_WTSI_2_113874863	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113879608 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr600	transcription start site region 600	1558 bp upstream
Tssr601	transcription start site region 601	1547 bp upstream
Tssr602	transcription start site region 602	1350 bp downstream
Tssr19429	transcription start site region 19429	1830 bp downstream
Tssr19430	transcription start site region 19430	1720 bp downstream
Tssr19431	transcription start site region 19431	1636 bp downstream
Tssr19432	transcription start site region 19432	1553 bp downstream
Tssr19433	transcription start site region 19433	963 bp downstream
Tssr19434	transcription start site region 19434	919 bp downstream
Tssr19435	transcription start site region 19435	42 bp upstream
Tssr19436	transcription start site region 19436	423 bp upstream
Tssr19437	transcription start site region 19437	1158 bp upstream
Tssr19438	transcription start site region 19438	1241 bp upstream
Tssr19439	transcription start site region 19439	1306 bp upstream
Tssr25660	transcription start site region 25660	1809 bp upstream
Tssr25661	transcription start site region 25661	1788 bp upstream
Tssr25662	transcription start site region 25662	1685 bp upstream
Tssr25663	transcription start site region 25663	1659 bp upstream
Tssr25664	transcription start site region 25664	1618 bp upstream
Tssr25665	transcription start site region 25665	1510 bp upstream
Tssr25666	transcription start site region 25666	956 bp upstream
Tssr25667	transcription start site region 25667	913 bp upstream
Tssr25668	transcription start site region 25668	886 bp upstream
Tssr25669	transcription start site region 25669	823 bp upstream
Tssr25670	transcription start site region 25670	74 bp downstream
Tssr25671	transcription start site region 25671	117 bp downstream
Tssr25672	transcription start site region 25672	186 bp downstream
Tssr25673	transcription start site region 25673	221 bp downstream
Tssr25674	transcription start site region 25674	425 bp downstream
Tssr25675	transcription start site region 25675	473 bp downstream
Tssr25676	transcription start site region 25676	510 bp downstream
Tssr25677	transcription start site region 25677	537 bp downstream
Tssr25678	transcription start site region 25678	1209 bp downstream
Tssr25679	transcription start site region 25679	1218 bp downstream
Tssr25680	transcription start site region 25680	1231 bp downstream
Tssr25681	transcription start site region 25681	1278 bp downstream
Tssr25682	transcription start site region 25682	1360 bp downstream
Tssr25683	transcription start site region 25683	1367 bp downstream
Tssr25684	transcription start site region 25684	1458 bp downstream
Tssr25685	transcription start site region 25685	1828 bp downstream