rs264578828 SNP Detail

Summary

• ID
  rs264578828
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34505827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCGGCTAG GCCTTTCCTA
  GGCGGTTTTC TCCTGCCTCG AATACATCAG AGAAACAACT ACAAGGAGGT CGGTCGGGCC
  TGCCCATCGT CTGGACGCCG TTTTGGTTGG GGACACTGGA GAGTCCTCTG CCTCTCCTCC
  GTAGGCAGAG CGACCCTGGG CTGGGTATTC TGAGCAGTCC CCTGCCTCAA CTCCCTGGGA
  K
  AGGGTCGGTC TGAGCTGAGC ATACCGAGCA ACCCCGGCCT CAACACCCTA TGGAGGAGGG
  CCCGGCTGGT TTGGGCACAC CCAGCAGTCC CCTGCTTCTC CTTCCTGCTG GCTGGCCCGC
  GGTTCCCCCC TCCTCGGAAG CCCCGCTTGG CTAGACCTGG CTCCCGCGCG CGGGCGCACG
  CGAGGACTGT GCACGCGAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400238222	MGP_WTSI_18_34532428	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264578828					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400238222	MGP_WTSI_18_34532428	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34505827 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9816	CpG island 9816	within coordinates
Reep5	receptor accessory protein 5	within coordinates
Rr352680	regulatory region 352680	within coordinates
Tssr152789	transcription start site region 152789	1732 bp upstream
Tssr152790	transcription start site region 152790	929 bp upstream
Tssr152791	transcription start site region 152791	787 bp upstream
Tssr152792	transcription start site region 152792	718 bp upstream
Tssr152793	transcription start site region 152793	288 bp upstream
Tssr152794	transcription start site region 152794	274 bp upstream
Tssr152795	transcription start site region 152795	251 bp upstream
Tssr152796	transcription start site region 152796	524 bp downstream
Tssr152797	transcription start site region 152797	539 bp downstream
Tssr152798	transcription start site region 152798	728 bp downstream